Detailed information of SNP:
|
SNP ID:
sf0134083162(Gbrowse)
Chromosome: chr01 Position: 34083162 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1287 | 95.96% | 4.04% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 369 | 87.80% | 12.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 258 | 82.95% | 17.05% |
| Tropical Japonica | 65 | 98.46% | 1.54% |
| Japonica Intermediate | 46 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134083162 | C->T | INTERGENIC | None |