Detailed information of SNP:
|
SNP ID:
sf0134124923(Gbrowse)
Chromosome: chr01 Position: 34124923 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 56.22% | 43.78% |
| All Indica | 795 | 35.97% | 64.03% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 43 | 93.02% | 6.98% |
| Indica I | 373 | 16.09% | 83.91% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 210 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 81.49% | 18.51% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134124923 | T->G | INTERGENIC | None |