Detailed information of SNP:
|
SNP ID:
sf0134159403(Gbrowse)
Chromosome: chr01 Position: 34159403 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.87% | 30.13% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 495 | 21.41% | 78.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 19.70% | 80.30% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134159403 | A->G | INTERGENIC | None |