Detailed information of SNP:
|
SNP ID:
sf0134199707(Gbrowse)
Chromosome: chr01 Position: 34199707 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1352 | 97.78% | 2.22% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 432 | 96.06% | 3.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 295 | 96.95% | 3.05% |
| Tropical Japonica | 77 | 89.61% | 10.39% |
| Japonica Intermediate | 60 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134199707 | T->C | INTERGENIC | None |