Detailed information of SNP:



SNP ID: sf0134235907(Gbrowse)

Chromosome: chr01

Position: 34235907
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1416 73.45% 26.55%
All Indica798 99.00% 1.00%
All Japonica497 26.96% 73.04%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 100.00% 0.00%
Indica Intermediate210 97.62% 2.38%
Temperate Japonica335 9.55% 90.45%
Tropical Japonica94 57.45% 42.55%
Japonica Intermediate68 70.59% 29.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 87.50% 12.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0134235907 G->A LOC_Os01g59230(LOC_Os01g59230.1) INTRON