Detailed information of SNP:
|
SNP ID:
sf0134276438(Gbrowse)
Chromosome: chr01 Position: 34276438 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 64.29% | 35.71% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 494 | 5.67% | 94.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 6.31% | 93.69% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134276438 | C->T | LOC_Os01g59300(LOC_Os01g59300.1) | INTRON |