Detailed information of SNP:
|
SNP ID:
sf0134309124(Gbrowse)
Chromosome: chr01 Position: 34309124 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1232 | 79.06% | 20.94% |
| All Indica | 796 | 98.37% | 1.63% |
| All Japonica | 330 | 38.79% | 61.21% |
| Aus | 53 | 33.96% | 66.04% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 201 | 24.38% | 75.62% |
| Tropical Japonica | 66 | 71.21% | 28.79% |
| Japonica Intermediate | 63 | 50.79% | 49.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134309124 | A->T | LOC_Os01g59350(LOC_Os01g59350.1) | INTRON |
| sf0134309124 | A->T | LOC_Os01g59350(LOC_Os01g59350.2) | INTRON |