Detailed information of SNP:
|
SNP ID:
sf0134319310(Gbrowse)
Chromosome: chr01 Position: 34319310 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 84.27% | 15.73% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134319310 | T->G | INTERGENIC | None |