Detailed information of SNP:
|
SNP ID:
sf0134416238(Gbrowse)
Chromosome: chr01 Position: 34416238 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.54% | 15.46% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 61.17% | 38.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134416238 | G->A | LOC_Os01g59520(LOC_Os01g59520.2) | Non-Synonymous SNP |
| sf0134416238 | G->A | LOC_Os01g59520(LOC_Os01g59520.3) | Non-Synonymous SNP |
| sf0134416238 | G->A | LOC_Os01g59520(LOC_Os01g59520.1) | Non-Synonymous SNP |