Detailed information of SNP:
|
SNP ID:
sf0134428638(Gbrowse)
Chromosome: chr01 Position: 34428638 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 59.23% | 40.77% |
| All Indica | 794 | 94.71% | 5.29% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134428638 | C->A | LOC_Os01g59550(LOC_Os01g59550.1) | INTRON |