Detailed information of SNP:
|
SNP ID:
sf0134466549(Gbrowse)
Chromosome: chr01 Position: 34466549 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 95.84% | 4.16% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 476 | 88.03% | 11.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 97.85% | 2.15% |
| Tropical Japonica | 88 | 67.05% | 32.95% |
| Japonica Intermediate | 62 | 66.13% | 33.87% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134466549 | C->A | LOC_Os01g59589(LOC_Os01g59589.1) | Synonymous |