Detailed information of SNP:
|
SNP ID:
sf0134493275(Gbrowse)
Chromosome: chr01 Position: 34493275 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 59.24% | 40.76% |
| All Indica | 794 | 92.82% | 7.18% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134493275 | C->T | INTERGENIC | None |