Detailed information of SNP:
|
SNP ID:
sf0134493415(Gbrowse)
Chromosome: chr01 Position: 34493415 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.07% | 32.93% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134493415 | C->G | INTERGENIC | None |