Detailed information of SNP:
|
SNP ID:
sf0134506588(Gbrowse)
Chromosome: chr01 Position: 34506588 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1244 | 93.65% | 6.35% |
| All Indica | 626 | 87.38% | 12.62% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 230 | 85.22% | 14.78% |
| Indica II | 205 | 79.51% | 20.49% |
| Indica Intermediate | 191 | 98.43% | 1.57% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134506588 | G->A | INTERGENIC | None |