Detailed information of SNP:
|
SNP ID:
sf0134513489(Gbrowse)
Chromosome: chr01 Position: 34513489 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 71.53% | 28.47% |
| All Indica | 799 | 58.82% | 41.18% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 46.93% | 53.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134513489 | A->G | LOC_Os01g59670(LOC_Os01g59670.1) | INTRON |