Detailed information of SNP:
|
SNP ID:
sf0134534402(Gbrowse)
Chromosome: chr01 Position: 34534402 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 81.57% | 18.43% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 494 | 56.68% | 43.32% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134534402 | A->G | INTERGENIC | None |