Detailed information of SNP:
|
SNP ID:
sf0134543731(Gbrowse)
Chromosome: chr01 Position: 34543731 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 51.28% | 48.72% |
| All Indica | 799 | 19.90% | 80.10% |
| All Japonica | 483 | 96.07% | 3.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 10.13% | 89.87% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 211 | 52.61% | 47.39% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 89 | 92.13% | 7.87% |
| Japonica Intermediate | 59 | 86.44% | 13.56% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134543731 | C->A | INTERGENIC | None |