Detailed information of SNP:



SNP ID: sf0134657816(Gbrowse)

Chromosome: chr01

Position: 34657816
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1408 72.59% 27.41%
All Indica797 99.37% 0.63%
All Japonica488 24.59% 75.41%
Aus67 98.51% 1.49%
Indica I375 99.20% 0.80%
Indica II213 100.00% 0.00%
Indica Intermediate209 99.04% 0.96%
Temperate Japonica326 14.42% 85.58%
Tropical Japonica94 36.17% 63.83%
Japonica Intermediate68 57.35% 42.65%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0134657816 T->C LOC_Os01g59940(LOC_Os01g59940.1) Non-Synonymous SNP