Detailed information of SNP:
|
SNP ID:
sf0134672304(Gbrowse)
Chromosome: chr01 Position: 34672304 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 68.64% | 31.36% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 497 | 18.11% | 81.89% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134672304 | C->T | INTERGENIC | None |