Detailed information of SNP:
|
SNP ID:
sf0134820037(Gbrowse)
Chromosome: chr01 Position: 34820037 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 58.57% | 41.43% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134820037 | G->T | INTERGENIC | None |