Detailed information of SNP:
|
SNP ID:
sf0134868930(Gbrowse)
Chromosome: chr01 Position: 34868930 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 55.97% | 44.03% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134868930 | A->G | LOC_Os01g60280(LOC_Os01g60280.1) | Synonymous |