Detailed information of SNP:
|
SNP ID:
sf0134885834(Gbrowse)
Chromosome: chr01 Position: 34885834 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 87.50% | 12.50% |
| All Indica | 781 | 78.62% | 21.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 91.23% | 8.77% |
| Indica II | 209 | 52.15% | 47.85% |
| Indica Intermediate | 207 | 83.09% | 16.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134885834 | C->T | LOC_Os01g60290(LOC_Os01g60290.1) | INTRON |