Detailed information of SNP:
|
SNP ID:
sf0134941958(Gbrowse)
Chromosome: chr01 Position: 34941958 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 71.02% | 28.98% |
| All Indica | 794 | 93.95% | 6.05% |
| All Japonica | 492 | 30.08% | 69.92% |
| Aus | 58 | 93.10% | 6.90% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 333 | 21.32% | 78.68% |
| Tropical Japonica | 91 | 24.18% | 75.82% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 77.78% | 22.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134941958 | T->C | INTERGENIC | None |