Detailed information of SNP:
|
SNP ID:
sf0134950210(Gbrowse)
Chromosome: chr01 Position: 34950210 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 51.06% | 48.94% |
| All Indica | 795 | 83.77% | 16.23% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 50.72% | 49.28% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134950210 | C->T | LOC_Os01g60440(LOC_Os01g60440.1) | INTRON |