Detailed information of SNP:
|
SNP ID:
sf0134969972(Gbrowse)
Chromosome: chr01 Position: 34969972 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.39% | 49.61% |
| All Indica | 799 | 82.73% | 17.27% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134969972 | G->A | INTERGENIC | None |