Detailed information of SNP:
|
SNP ID:
sf0134973000(Gbrowse)
Chromosome: chr01 Position: 34973000 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 84.59% | 15.41% |
| All Indica | 755 | 73.64% | 26.36% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 90.57% | 9.43% |
| Indica II | 199 | 34.17% | 65.83% |
| Indica Intermediate | 206 | 83.01% | 16.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134973000 | T->C | LOC_Os01g60480(LOC_Os01g60480.1) | Non-Synonymous SNP |