Detailed information of SNP:
|
SNP ID:
sf0134993478(Gbrowse)
Chromosome: chr01 Position: 34993478 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 97.13% | 2.87% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 485 | 92.16% | 7.84% |
| Aus | 57 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 94.28% | 5.72% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 61 | 73.77% | 26.23% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134993478 | G->A | INTERGENIC | None |