Detailed information of SNP:
|
SNP ID:
sf0135016672(Gbrowse)
Chromosome: chr01 Position: 35016672 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 96.23% | 3.77% |
| All Indica | 795 | 98.24% | 1.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 59 | 52.54% | 47.46% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135016672 | C->G | LOC_Os01g60560(LOC_Os01g60560.1) | Non-Synonymous SNP |