Detailed information of SNP:
|
SNP ID:
sf0135049311(Gbrowse)
Chromosome: chr01 Position: 35049311 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 75.27% | 24.73% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 482 | 30.50% | 69.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 324 | 15.43% | 84.57% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 65 | 66.15% | 33.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135049311 | G->A | INTERGENIC | None |