Detailed information of SNP:
|
SNP ID:
sf0135057594(Gbrowse)
Chromosome: chr01 Position: 35057594 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 92.35% | 7.65% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 51 | 13.73% | 86.27% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135057594 | A->G | INTERGENIC | None |