Detailed information of SNP:
|
SNP ID:
sf0135061062(Gbrowse)
Chromosome: chr01 Position: 35061062 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 76.57% | 23.43% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 466 | 42.27% | 57.73% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 311 | 31.51% | 68.49% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 64 | 53.12% | 46.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135061062 | T->C | INTERGENIC | None |