Detailed information of SNP:
|
SNP ID:
sf0135076749(Gbrowse)
Chromosome: chr01 Position: 35076749 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 78.32% | 21.68% |
| All Indica | 796 | 76.13% | 23.87% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 211 | 47.87% | 52.13% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135076749 | G->A | INTERGENIC | None |