Detailed information of SNP:
|
SNP ID:
sf0135079920(Gbrowse)
Chromosome: chr01 Position: 35079920 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 79.90% | 20.10% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 465 | 42.80% | 57.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 310 | 27.42% | 72.58% |
| Tropical Japonica | 88 | 80.68% | 19.32% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135079920 | A->G | INTERGENIC | None |