Detailed information of SNP:
|
SNP ID:
sf0135087111(Gbrowse)
Chromosome: chr01 Position: 35087111 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1273 | 96.86% | 3.14% |
| All Indica | 679 | 95.43% | 4.57% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 48 | 91.67% | 8.33% |
| Indica I | 310 | 95.16% | 4.84% |
| Indica II | 189 | 96.30% | 3.70% |
| Indica Intermediate | 180 | 95.00% | 5.00% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135087111 | G->T | INTERGENIC | None |