Detailed information of SNP:
|
SNP ID:
sf0135106872(Gbrowse)
Chromosome: chr01 Position: 35106872 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1301 | 96.54% | 3.46% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 380 | 93.16% | 6.84% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 246 | 93.09% | 6.91% |
| Tropical Japonica | 80 | 98.75% | 1.25% |
| Japonica Intermediate | 54 | 85.19% | 14.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135106872 | T->C | INTERGENIC | None |