Detailed information of SNP:
|
SNP ID:
sf0135168973(Gbrowse)
Chromosome: chr01 Position: 35168973 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 63.73% | 36.27% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 497 | 20.93% | 79.07% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135168973 | C->T | INTERGENIC | None |