Detailed information of SNP:
|
SNP ID:
sf0135189023(Gbrowse)
Chromosome: chr01 Position: 35189023 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 98.46% | 1.54% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 453 | 96.91% | 3.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 63 | 79.37% | 20.63% |
| Japonica Intermediate | 57 | 98.25% | 1.75% |
| Group VI/Aromatic | 7 | 71.43% | 28.57% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135189023 | G->A | INTERGENIC | None |