Detailed information of SNP:
|
SNP ID:
sf0135232032(Gbrowse)
Chromosome: chr01 Position: 35232032 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 88.98% | 11.02% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 494 | 68.42% | 31.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 57.31% | 42.69% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135232032 | A->T | LOC_Os01g60910(LOC_Os01g60910.2) | UTR_3_PRIME |