Detailed information of SNP:
|
SNP ID:
sf0135236956(Gbrowse)
Chromosome: chr01 Position: 35236956 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1233 | 56.77% | 43.23% |
| All Indica | 616 | 98.21% | 1.79% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 262 | 98.09% | 1.91% |
| Indica II | 186 | 100.00% | 0.00% |
| Indica Intermediate | 168 | 96.43% | 3.57% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135236956 | G->T | INTERGENIC | None |