Detailed information of SNP:
|
SNP ID:
sf0135249131(Gbrowse)
Chromosome: chr01 Position: 35249131 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 92.74% | 7.26% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 430 | 79.77% | 20.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 290 | 84.14% | 15.86% |
| Tropical Japonica | 80 | 76.25% | 23.75% |
| Japonica Intermediate | 60 | 63.33% | 36.67% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135249131 | C->T | INTERGENIC | None |