Detailed information of SNP:
|
SNP ID:
sf0135424334(Gbrowse)
Chromosome: chr01 Position: 35424334 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 55.00% | 45.00% |
| All Indica | 792 | 90.28% | 9.72% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 371 | 90.57% | 9.43% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135424334 | A->G | INTERGENIC | None |