Detailed information of SNP:
|
SNP ID:
sf0135429033(Gbrowse)
Chromosome: chr01 Position: 35429033 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.35% | 4.65% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135429033 | C->T | INTERGENIC | None |