Detailed information of SNP:
|
SNP ID:
sf0135554857(Gbrowse)
Chromosome: chr01 Position: 35554857 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 90.98% | 9.02% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 489 | 74.64% | 25.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 69.09% | 30.91% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135554857 | T->C | INTERGENIC | None |