Detailed information of SNP:
|
SNP ID:
sf0135566729(Gbrowse)
Chromosome: chr01 Position: 35566729 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 52.72% | 47.28% |
| All Indica | 752 | 24.47% | 75.53% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 63 | 19.05% | 80.95% |
| Indica I | 353 | 30.88% | 69.12% |
| Indica II | 202 | 11.39% | 88.61% |
| Indica Intermediate | 197 | 26.40% | 73.60% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 56.76% | 43.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135566729 | C->T | INTERGENIC | None |