Detailed information of SNP:
|
SNP ID:
sf0135570212(Gbrowse)
Chromosome: chr01 Position: 35570212 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 50.82% | 49.18% |
| All Indica | 787 | 81.32% | 18.68% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 369 | 78.86% | 21.14% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 206 | 81.07% | 18.93% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135570212 | C->T | LOC_Os01g61490(LOC_Os01g61490.1) | Synonymous |