Detailed information of SNP:
|
SNP ID:
sf0135582072(Gbrowse)
Chromosome: chr01 Position: 35582072 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 90.72% | 9.28% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 73.67% | 26.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 68.58% | 31.42% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135582072 | A->G | LOC_Os01g61500(LOC_Os01g61500.1) | INTRON |
| sf0135582072 | A->G | LOC_Os01g61500(LOC_Os01g61500.2) | INTRON |