Detailed information of SNP:
|
SNP ID:
sf0135592557(Gbrowse)
Chromosome: chr01 Position: 35592557 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 61.02% | 38.98% |
| All Indica | 770 | 38.18% | 61.82% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 357 | 45.66% | 54.34% |
| Indica II | 209 | 29.67% | 70.33% |
| Indica Intermediate | 204 | 33.82% | 66.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135592557 | G->A | INTERGENIC | None |