Detailed information of SNP:
|
SNP ID:
sf0135639843(Gbrowse)
Chromosome: chr01 Position: 35639843 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.35% | 34.65% |
| All Indica | 798 | 40.35% | 59.65% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 50.27% | 49.73% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135639843 | A->C | LOC_Os01g61610(LOC_Os01g61610.1) | UTR_3_PRIME |
| sf0135639843 | A->C | LOC_Os01g61610(LOC_Os01g61610.2) | UTR_3_PRIME |
| sf0135639843 | A->C | LOC_Os01g61610(LOC_Os01g61610.3) | UTR_3_PRIME |