Detailed information of SNP:
|
SNP ID:
sf0135641937(Gbrowse)
Chromosome: chr01 Position: 35641937 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 65.42% | 34.58% |
| All Indica | 797 | 40.40% | 59.60% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 50.27% | 49.73% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135641937 | C->G | INTERGENIC | None |