Detailed information of SNP:
|
SNP ID:
sf0135644812(Gbrowse)
Chromosome: chr01 Position: 35644812 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 95.20% | 4.80% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 414 | 85.27% | 14.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 279 | 81.72% | 18.28% |
| Tropical Japonica | 79 | 97.47% | 2.53% |
| Japonica Intermediate | 56 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135644812 | T->C | INTERGENIC | None |